Manuel B. Garcia

Manuel B. Garcia serves as the Senior Director for Educational Technology and Digital Learning at FEU Institute of Technology, Manila, Philippines. Read More

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What Goes Into a Research Preregistration? A Guide to Hypotheses, Sampling, Variables, Exclusions, and Analyses

A useful preregistration specifies the decisions that matter for interpreting your eventual claims, not every minor detail of the study. Learn what usually deserves advance specification and how detailed the plan should be.

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What Should You Preregister? Guide 190 of 217
01 · The Question

How Much of Your Study Plan Needs to Be Preregistered?

Once you decide to preregister a study, a surprisingly difficult question follows: what exactly are you supposed to write down?

You could record only the hypothesis. You could preregister an entire protocol. You could specify every variable, exclusion rule, statistical model, transformation, covariate, and contingency you can imagine. Somewhere between those extremes lies a plan detailed enough to be informative without pretending that every future research decision can be anticipated.

The appropriate level of detail depends on the study. A useful preregistration focuses particularly on decisions that could affect the interpretation of the claims you intend to make.

02 · The Short Answer

Preregister the Decisions That Matter for Your Eventual Claims

In Brief

A useful preregistration should specify, where relevant, your research questions or hypotheses, study design, sampling and stopping plan, variables and outcomes, exclusion rules, data-processing decisions, and planned analyses with enough detail that another researcher can understand what you intended to do before seeing the results.

You do not need to predict every operational detail or every problem that might arise. The appropriate content depends on the research design and purpose of the preregistration, but vague statements that leave consequential analytical choices unresolved provide limited constraint or transparency.

03 · What You Need to Know

What Belongs in a Useful Preregistration

Start With the Claims You Expect the Study to Support

The easiest mistake is to treat preregistration as a form with boxes to fill rather than as a record of research decisions.

Begin instead with the claims you expect to make. If you intend to claim that an intervention improves a particular outcome, what decisions could materially affect that conclusion? If you intend to test a directional hypothesis, what observation would count as evidence for or against it? If several outcomes will be collected, which one is primary?

This perspective helps determine how much detail is useful. The purpose is not to document every mundane action in advance. It is to specify enough of the inferential path that readers can later distinguish what was planned from what emerged after the results became available.

Research Questions and Hypotheses

If your study tests hypotheses, state them precisely enough that the predicted relationship can be identified. Name the relevant variables, populations or conditions where appropriate, and indicate direction when the hypothesis is genuinely directional.

“Technology affects learning” is too vague to establish much. A more informative hypothesis might specify that students receiving a particular intervention are expected to achieve higher scores on a defined primary outcome than students in a comparison condition.

Not every study requires a conventional hypothesis. Exploratory, descriptive, qualitative, and other designs may instead preregister research questions, objectives, initial expectations, or aspects of the research process. Researchers should not manufacture hypotheses simply to make a study look confirmatory.

Study Design and Conditions

Describe the basic design sufficiently to establish how the research question will be investigated. Depending on the study, this might include experimental conditions, comparison groups, repeated measurements, randomization procedures, blinding, survey waves, observational structure, or other central design features.

This section should answer a practical question: what study did you intend to conduct?

You do not necessarily need to reproduce every procedural detail already documented elsewhere. A detailed research protocol and a preregistration can overlap without being identical. The preregistration should preserve the information needed to understand the decisions whose timing matters.

Sampling Plan and Stopping Rule

Specify how participants, observations, cases, documents, or other units will enter the study. Where relevant, identify the target sample size and explain how it was determined.

The stopping rule can be particularly important. If researchers are free to repeatedly examine results and stop data collection when a desirable pattern appears, the sampling process may become dependent on the observed outcome.

A preregistration might therefore state that recruitment will stop after a specified number of usable observations, on a particular date, after a predefined resource limit, or according to a formal sequential procedure.

Not every study permits a perfectly fixed sample size. The key is to describe the rule you actually intend to use rather than inventing precision that the research context cannot support.

Eligibility and Exclusion Criteria

State which observations will be included and which may be excluded.

For participant research, this may involve eligibility criteria, incomplete responses, failed attention checks, duplicate submissions, implausibly fast completion, protocol violations, or other prespecified conditions. Laboratory studies may have equipment-failure criteria. Secondary-data studies may need rules for missing or unusable records.

Exclusions matter because different defensible rules can produce different analytical samples. Specifying consequential criteria before seeing their effects can make later decisions easier to interpret.

Watch Out

A statement such as “outliers will be removed when necessary” leaves the consequential decision unresolved. If outlier exclusion matters to the analysis, specify how an outlier will be identified and what will happen when one is detected, or state a planned sensitivity analysis when a single rule would be inappropriate.

Variables, Measures, and Outcomes

Identify the variables needed for the primary research questions and explain how they will be operationalized.

If a construct can be measured in several ways, specify which measure will represent it. If a scale contains multiple items, indicate how they will be combined when that decision could affect the analysis. If several outcomes are collected, identify their roles where appropriate, such as primary, secondary, manipulation-check, descriptive, or exploratory outcomes.

These distinctions can prevent a study with many measured outcomes from being reported later as though the most favorable outcome had always been the central one.

Data Processing and Variable Construction

The route from raw data to an analyzed variable may involve substantial discretion.

Researchers may reverse-code items, calculate composite scores, transform variables, recode categories, aggregate repeated observations, handle impossible values, or derive indices from several measures. If such choices are consequential and can reasonably be anticipated, they belong in the preregistration.

Likewise, specify how missing data will be handled when this can be determined prospectively. Different approaches to missingness can affect both the analytical sample and the resulting estimates.

The Analysis Plan Needs More Than the Name of a Statistical Test

Writing “we will use regression” or “data will be analyzed using ANOVA” often leaves important choices unspecified.

A more informative plan identifies which variables enter which analysis, the model specification, relevant interactions, covariates, contrasts, transformations, and the criteria used to evaluate the hypothesis. If several models will be fitted, identify which analysis addresses the primary claim and what the others are intended to accomplish.

For null-hypothesis significance testing, specify the relevant significance threshold where appropriate. If multiple testing adjustments will be used, describe them. If the analysis uses Bayesian inference, equivalence testing, model comparison, machine learning, or another inferential framework, specify the corresponding decision or evaluation criteria that matter for interpretation.

The Open Science Framework's current guidance similarly recommends describing statistical tests, decision criteria, exclusion rules, variable combinations, model form, covariates, and outcomes in a rigorous preregistration.

Link Hypotheses to Analyses

A list of hypotheses followed by a separate list of statistical procedures can still leave ambiguity about which test addresses which prediction.

Where possible, map them explicitly.

Hypothesis Students receiving the intervention will have higher post-test scores than students in the comparison condition after accounting for baseline performance.
Outcome Post-test achievement score calculated according to the prespecified scoring procedure.
Analysis Regress post-test score on study condition and baseline score using the prespecified model.
Evaluation Interpret the estimated intervention effect according to the prespecified inferential criteria and report the estimate with its uncertainty.

This linkage makes the preregistration easier to interpret because the reader can reconstruct the intended path from prediction to evidence.

Specify Foreseeable Contingencies When They Matter

Research plans often depend on conditions that cannot be known in advance. A statistical assumption may fail. Recruitment may be lower than expected. A measure may show inadequate properties. A model may not converge.

You can sometimes anticipate these possibilities with conditional rules:

“If condition A occurs, we will use procedure B; otherwise, we will use procedure C.”

Such rules can preserve flexibility while specifying in advance what will trigger a change. They are often more realistic than pretending that a single analytical route will work under every circumstance.

Not every contingency can be predicted, of course. When something genuinely unexpected occurs, a study can still change after preregistration.

Identify What Is Confirmatory and What Is Exploratory

If your study includes both prespecified hypothesis tests and planned exploratory work, say so.

For example, you might preregister two primary confirmatory analyses while also stating that relationships among several secondary variables will be explored without prespecified hypotheses.

You do not need to preregister the results of an exploration that has not happened yet. Indeed, that would rather defeat the linguistic meaning of “exploration.” What you can document is that exploratory analyses are expected and how you intend to distinguish them from confirmatory claims.

This preserves the complementary roles of exploratory and confirmatory research.

The Right Level of Detail Is Enough to Reduce Meaningful Ambiguity

There is no universal word count that makes a preregistration adequate.

One useful test is to ask whether two competent analysts could read the preregistration and independently reach roughly the same understanding of the primary analysis. If one analyst could reasonably choose one outcome, exclusion rule, model, and covariate set while another could choose entirely different ones, the plan may still leave substantial flexibility.

That does not mean every keystroke must be specified. Excessive detail can create its own problems, particularly when researchers make arbitrary decisions merely because they feel obliged to commit to something before sufficient information exists.

Useful specificity Clarifies decisions that could materially affect the study's claims and provides workable rules for foreseeable alternatives.
False precision Commits to arbitrary details that cannot reasonably be determined yet or implies certainty about circumstances the researchers cannot know in advance.

The Appropriate Template Depends on the Research

You do not need to invent a preregistration format from scratch. Registries and research communities provide structured templates.

The Open Science Framework currently offers several registration templates, including a general-purpose OSF Preregistration as well as templates for qualitative research, secondary-data analysis, systematic reviews, simulation studies, eye-tracking research, and other designs.

That variety reflects an important principle: the content of preregistration should follow the methodological logic of the study. A template designed for a conventional confirmatory experiment may be poorly suited to qualitative preregistration or another research design in which decisions emerge differently.

Preregister What You Know, Not What You Wish You Knew

Sometimes a consequential decision genuinely cannot be made yet. Perhaps a later analytical choice depends on information that will become available only after data collection begins.

Do not hide that uncertainty behind vague language. State what remains unresolved, explain why where useful, and specify the decision rule if one can be determined in advance.

A transparent statement of uncertainty can be more informative than an apparently complete plan built on arbitrary commitments.

04 · A Practical Example

From a Vague Plan to an Informative Preregistration

Hypothetical Example

Testing an Educational Intervention

A researcher wants to examine whether retrieval-practice activities improve achievement among university students. Compare two possible preregistrations.

Decision Too Vague More Informative
Hypothesis The intervention will improve learning. Students assigned to the retrieval-practice condition are expected to have higher post-test achievement scores than students in the comparison condition after accounting for baseline achievement.
Sample University students will participate. Eligible students from the participating courses will be recruited until the prespecified target of usable observations is reached, subject to the stated recruitment deadline.
Primary outcome Student performance will be measured. The primary outcome will be the total post-test achievement score calculated according to the stated scoring procedure.
Exclusions Invalid responses may be removed. Observations will be excluded according to the specified eligibility, completion, and data-quality criteria.
Analysis The groups will be statistically compared. The primary analysis will estimate the intervention effect on post-test achievement while adjusting for baseline achievement using the prespecified model.

The second version is useful not because it is longer, but because it resolves choices that could otherwise be made after the results are visible.

If an unexpected problem later requires a different analysis, the researcher can depart from the plan and report the change. The preregistration still serves its purpose because it shows what the intended analysis was before that problem arose.

05 · What Researchers Often Get Wrong

Common Mistakes When Deciding What to Preregister

Misconception

Is Preregistering the Hypothesis Enough?

Often not. If the study leaves substantial flexibility in outcomes, exclusions, sampling, variable construction, or analysis, recording only the hypothesis may reveal little about how that hypothesis was intended to be tested.

Misconception

Do You Need to Specify Every Detail of the Study?

No. Focus on decisions that matter for understanding the design and evaluating the eventual claims. Recording inconsequential operational details merely to make the preregistration longer does not necessarily improve transparency.

Misconception

Is Naming the Statistical Test a Complete Analysis Plan?

Usually not. “Regression,” “ANOVA,” or “t-test” can leave unresolved which variables are analyzed, how they are constructed, which observations are included, which covariates or interactions enter the model, and how the result will be interpreted.

Misconception

Should You Preregister Only Decisions You Are Certain Will Never Change?

No. Preregistration records the plan you judge appropriate before the relevant results are known. If later information justifies a change, you can deviate transparently rather than following an inferior method merely to preserve perfect adherence.

Misconception

Does More Detail Always Mean a Better Preregistration?

No. Greater specificity can reduce ambiguity, but arbitrary commitments and unnecessary procedural detail can make a preregistration cumbersome without improving interpretation. The relevant question is whether the detail clarifies consequential research decisions.

Misconception

Does Every Research Design Need the Same Information?

No. A confirmatory experiment, qualitative interview study, secondary-data analysis, systematic review, and simulation study can involve quite different decision points. Preregistration should reflect those methodological differences.

06 · What This Means for You

Build the Preregistration Around Consequential Decisions

A practical way to draft your preregistration is to work backward from the eventual results section. Imagine that data collection is finished and you are about to analyze the study. Which choices could you make at that point that might materially change the answer?

A simple decision framework

If a decision could change which observations enter the analysis
Consider specifying the sampling, eligibility, exclusion, and missing-data rules in advance.
If a decision could change what variable represents your primary outcome
Specify the measure, scoring procedure, transformation, or variable-construction rule.
If several reasonable analyses could address the same hypothesis
Identify the primary analysis and the conditions under which an alternative would be used.
If you cannot reasonably make a decision yet
State the uncertainty honestly and, when possible, specify what information or rule will determine the later choice.
If you expect additional exploratory analyses
Allow for them explicitly and distinguish them from the analyses intended to test prespecified claims.

After drafting the plan, look for words that conceal unresolved decisions: “approximately,” “appropriate,” “if necessary,” “outliers,” “relevant covariates,” “standard analysis,” or “data will be cleaned.” These expressions are not always wrong, but each should prompt a question: could two researchers interpret this instruction differently in a way that changes the result?

If yes, greater specificity may be useful.

Finally, do not judge the preregistration solely by whether the completed study matches it perfectly. Deviations are not automatically failures. The more important question is whether readers can understand what departed from the original plan and why.

07 · A Quick Checklist

What to Check Before Submitting Your Preregistration

Before registering your plan, check:
Are the primary research questions or hypotheses stated clearly enough to identify what is being investigated?
Is the study design described sufficiently to understand how the questions will be investigated?
Have you specified how observations will be sampled and when data collection will stop, where applicable?
Are important eligibility and exclusion criteria defined before their effects on the results are known?
Are primary outcomes and important variables operationally defined?
Are consequential scoring, transformation, aggregation, and missing-data decisions specified where possible?
Does each primary hypothesis or question connect clearly to its intended analysis?
Are important model specifications, covariates, inferential criteria, and foreseeable contingencies described?
Can readers distinguish confirmatory analyses from work that is intentionally exploratory?
Have you reviewed the current requirements and template guidance of the registry you intend to use?
08 · Frequently Asked Questions

Frequently Asked Questions About What to Preregister

Do I need to preregister my exact sample size?

Specify the intended sample size or stopping rule when it is relevant and can reasonably be determined in advance. If recruitment depends on practical constraints, describe those constraints and the rule you will actually use rather than claiming a fixed target that does not reflect the design.

Do I need to preregister every variable I collect?

Not necessarily. Variables relevant to primary hypotheses, outcome definitions, exclusions, covariates, and planned analyses deserve particular attention. Additional variables may be identified as secondary or exploratory when appropriate.

Should I preregister covariates?

If covariate inclusion is part of the planned primary analysis, specify which covariates will be used and how they enter the model. Leaving the choice until after seeing which specification produces a preferable result weakens the value of advance specification.

Should I preregister how I will handle missing data?

When missing data are foreseeable and the handling strategy could materially affect the analysis, specifying the planned approach can be useful. If the appropriate method depends on features that cannot yet be known, state the relevant contingency rather than making an arbitrary commitment.

Do I need to preregister exploratory analyses?

You do not need to predict every analysis that exploration might generate. You can state that exploratory analyses will be conducted and distinguish them from prespecified confirmatory analyses. Any new analyses developed after seeing the data can subsequently be reported as exploratory.

What if I forget something important in the preregistration?

Do not silently pretend it was specified. How an addition should be documented depends partly on when you notice it and what information you have already seen. Preserve the chronology and describe consequential additions transparently.

Can I use a preregistration template instead of writing my own?

Yes. Structured templates can help identify decisions researchers might otherwise overlook. Choose a template suited to your research design and treat its prompts as aids to transparent planning rather than assuming that completing every field automatically produces an adequate preregistration.

How detailed should my analysis plan be?

It should generally be detailed enough to identify how the primary claims will be evaluated and to reduce consequential ambiguity. The necessary detail depends on the method, but simply naming a statistical test is often insufficient.

09 · The Bottom Line

Preregister the Decisions That Could Change the Story Your Data Tell

The Bottom Line

A useful preregistration specifies the research questions or hypotheses and the consequential design, sampling, measurement, exclusion, processing, and analysis decisions that another researcher would need to understand what you planned before seeing the results.

The goal is not maximal detail for its own sake. Aim for meaningful specificity: resolve important choices when you reasonably can, state foreseeable contingencies, acknowledge what remains uncertain, and preserve a clear distinction between the advance plan and decisions made later.

10 · Sources and Further Reading

Sources and Further Reading

11 · Cite this Guide

How to Cite This Guide

This guide is intended to be read, shared, and used in research, teaching, and academic work. If you draw on its ideas, explanations, or other content, please acknowledge the source by citing the guide. Doing so gives appropriate credit and helps your readers locate the original resource.

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